実績
2010
原著論文
Taji, T., Komatsu, K., Katori, T., Kawasaki, Y., Sakata, Y., Tanaka, S., Kobayashi, M., Toyoda, A., Seki, M. and Shinozaki, K. (2010) Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila. BMC Plant Biol. 10:261.
Koyama, T., Mitsuda, N., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2010) TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during the differentiation of leaves in Arabidopsis. Plant Cell 22:3574-3588.
Himuro, Y., Tanaka, H., Hashiguchi, M., Ichikawa, T., Nakazawa, M., Seki, M., Fujita, M., Shinozaki, K., Matsui, M., Akashi, R. and Hoffmann, F. (2010) FOX-superroots of Lotus corniculatus, overexpressing Arabidopsis full-length cDNA, show stable variations in morphological traits. J Plant Physiol. 168:181-187.
Okamoto, M., Tatematsu, K., Matsui, A., Morosawa, T., Ishida, J., Tanaka, M., Endo, A.T., Mochizuki, Y., Toyoda, T., Kamiya, Y., Shinozaki, K., Nambara, E. and Seki, M. (2010) Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays. Plant J. 62:39-51.
Numa, H., Kim, J.M., Matsui, A., Kurihara, Y., Morosawa, T., Ishida, J., Mochizuki, Y., Kimura, H., Shinozaki, K., Toyoda, T., Seki, M., Yoshikawa, M. and Habu, Y. (2010) Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana. EMBO J. 29:352-362.
総 説
Kim, J.M., To, T., Nishioka, T. and Seki, M. (2010) Chromatin regulation functions in plant abiotic stress responses. Plant Cell and Environ. 33:604-611.
Urano, K., Kurihara, Y., Seki, M. and Shinozaki, K. (2010) 'Omics' analyses of regulatory networks in plant abiotic stress responses. Current Opin. Plant Biol. 13:132-138.
Matsui, A., Ishida, J., Morosawa, T., Okamoto, M., Kim, J.M., Kurihara, Y., Kawashima, M., Tanaka, M., To, T., Nakaminami,K., Kaminuma, E., Endo, T., Mochizuki, Y., Kawaguchi, S., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M. (2010) Arabidopsis tiling array analysis to identify the stress-responsive genes. In "Methods in Molecular Biology-Plant Stress Tolerance (Edited by Dr. Ramanjulu Sunkar)". Humana Press Inc., NJ. 639:141-155.
2009
原著論文
Tsutsui, T., Kato, W., Asada, Y., Sako, K., Sato, T., Sonoda, Y., Kidokoro, S., Yamaguchi-Shinozaki, K., Tamaoki, M., Arakawa, K., Ichikawa, T., Nakazawa, M., Seki, M., Shinozaki, K., Matsui, M., Ikeda, A. and Yamaguchi, J. (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J. Plant Res. 122:633-643.
Kurihara, Y., Kaminuma, E., Matsui1, A., Kawashima, M., Tanaka, M., Morosawa, T., Ishida, J., Mochizuki, Y., Shinozaki, K., Toyoda, T. and Seki, M. (2009) Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants. Plant Cell Physiol. 50:1715-1720.
Yamamoto, Y., Yoshitsugu, T., Sakurai, T., Seki, M., Shinozaki, K. and Obokata, J. (2009) Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis. Plant J. 60(2):350-362.
Sato, T., Maekawa, S., Yasuda, S., Sonoda, Y., Katoh, E., Ichikawa, T., Nakazawa, M., Seki, M., Shinozaki, K., Matsui, M., Goto, D.B., Ikeda, A. and Yamaguchi, J. (2009) CNI1/ATL31, a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. Plant J.60:852-864.
Kawaura, K., Mochida, K., Enju, A., Totoki, Y., Toyoda, A., Sakaki, Y., Kai, C., Kawai, J., Hayashizaki, Y., Seki, M., Shinozaki, K. and Ogihara, Y. (2009) Assessment of adaptive evolution between wheat and rice as deduced from the full-length cDNA sequence data and the expression patterns of common wheat. BMC Genomics 10:271.
Igawa, T., Fujiwara, M., Takahashi, H., Sawasaki, T., Endo, Y., Seki, M., Shinozaki, K., Fukao, Y. and Yanagawa, Y. (2009) Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. J. Exp. Bot. 60:3067-3073.
Iida, K., Fukami-Kobayashi, K., Toyoda, A., Sakaki, Y., Kobayashi, M., Seki, M. and Shinozaki, K. (2009) Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs. DNA Res. 16:155-164.
Takahashi, H., Nozawa, A., Seki, M., Shinozaki, K., Endo, Y. and Sawasaki, T. (2009) A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis. BMC Plant Biol. 9:39.
Sato, K., Shin-I, T., Seki, M., Shinozaki, K., Yoshida, H., Takeda, K., Yamazaki, Y., Conte, M. and Kohara, Y. (2009) Development of 5,006 full-length cDNAs in barley: a tool for accessing cereal genomics resources. DNA Res. 16:81-89.
Kurihara, Y., Matsui, A., Hanada, K., Kawashima, M., Ishida, J., Morosawa, T., Tanaka, M., Kaminuma, E., Mochizuki, Y., Matsushima, A., Toyoda, T., Shinozaki, K. and Seki, M. (2009) Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc. Natl. Acad. Sci. USA 106:2453-2458.
Kondou, Y., Higuchi, M.,Takahashi, S., Sakurai, T., Ichikawa, T., Kuroda, H., Yoshizumi, T., Tsumoto, Y., Horii, Y., Kawashima, M., Hasegawa, Y., Kuriyama, T., Matsui, K., Kusano, M., Albinsky, D., Takahashi, H., Nakamura, Y., Suzuki, M., Sakakibara, H., Kojima, M., Akiyama, K., Kurotani, A., Seki, M., Fujita, M., Enju, A., Yokotani, N., Saitou, T., Ashidate, K. Fujimoto, N., Ishikawa, Y., Mori, Y., Nanba, R., Takata, K., Uno, K., Sugano, S., Natsuki, J., Dubouzet, J., Maeda, S., Ohtake, M., Mori, M., Oda, K., Takatsuji, H., Hirochika, H. and Matsui, M. (2009) Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J. 57:883-894.
Okamoto, M., Tanaka, Y., Abrams, S.R., Kamiya, Y., Seki, M. and Nambara, E. (2009) High humidity induces ABA 8'-hydroxylase in stomata and vasculature to regulate local and systemic ABA responses in Arabidopsis. Plant Physiol. 149:825-834.
総 説
Seki, M., and Shinozaki, K.(2009) Functional genomics using RIKEN Arabidopsis thaliana Full-Length (RAFL) cDNAs. J. Plant Res. 122:355-366.
Seki, M., Okamoto, M., Matsui, A., Kim, J.M., Kurihara, Y., Ishida, J., Morosawa, T., Kawashima, M., To, T. and Shinozaki, K. (2009) Microarray analysis for studying plant abiotic stress responses. In "Molecular Techniques in Crop Improvement, 2nd edition. (Edited by SM Jain and DS Brar) ". Springer Publisher (in press).
Seki,M., Kamiya, A., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2009) Generation of full-length cDNA libraries: focus on plants. In "Methods in Molecular Biology-ESTs: Generation and Analysis (Edited by Dr. John Parkinson)". Vol. 49, pp. 49-68. Humana Press Inc., NJ.
関 原明. （最新研究の紹介） 植物の環境ストレス応答のしくみにトランス クリプトームで迫る. 研究をささえるモデル生物（吉川 寛、堀 寛 編）. (株) 化学同人編集部 151-152 (2009).
2008
原著論文
Taji, T., Sakurai, T., Mochida, K., Ishikawa, A., Kurotani, A., Totoki, Y., Toyoda, A., Sakaki, Y., Seki, M., Ono, H., Sakata, Y., Tanaka, S. and Shinozaki, K. (2008) Large scale collection and annotation of full-length cDNAs from a model halophyte, Thellungiella halophila. BMC Plant Biol. 8:115.
Umezawa, T., Sakurai, T., Totoki, Y., Toyoda, A., Seki, M., Ishikawa, A., Akiyama, K., Kurotani, A., Yoshida, T., Mochida, K., Kasuga, M., Todaka, D., Maruyama, K., Nakashima, K., Enju, A., Mizukado, S., Ahmed, S., Yoshihara, K., Harada, K., Tsubokura, Y., Hayashi, M., Sato, S., Anai, T., Ishimoto, M., Funatsuki, H., Teraishi, M., Osaki, M., Shinano, T., Akashi, R., Sasaki, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2008) Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length enriched cDNA library. DNA Res. 15:333-346.
Kurihara, Y., Matsui, A., Kawashima, M., Kaminuma, E., Ishida, J., Morosawa, T., Mochizuki, Y., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M. (2008) Identification of the candidate genes regulated by RNA-directed DNA methylation. Biochem. Biophys. Res. Commun. 376:553-557.
Kim, J.M., Kim-To, T., Ishida, J., Morosawa, T., Kawashima, M., Matsui, A., Toyoda, T., Kimura, H., Shinozaki, K. and Seki, M. (2008) Alterations of lysine modifications on histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol. 49:1580-1588.
Futamura, N., Totoki, Y., Toyoda, A., Igasakai, T., Nanjo, T., Seki, M., Sakaki, Y., Mari, A., Shinozaki, K. and Shinohara, K. (2008) Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili. BMC Genomics 9: 383.
Matsui, A., Ishida, J., Morosawa, T., Mochizuki, Y., Kaminuma, E., Endo, T.A., Okamoto, M., Nambara, E., Nakajima, M., Kawashima, M., Satou, M., Kim, J.M., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M. (2008) Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array. Plant Cell Physiol. 49: 1135-1149.
Yasuda, M., Ishikawa, A., Jikumaru, Y., Seki, M., Umezawa, T., Asami, T., Maruyama-Nakashita, A., Kudoh, T., Shinozaki, K., Yoshida, S. and Nakashita, H. (2008) Antagonistic Interaction between Systemic Acquired Resistance and the Abscisic Acid-mediated Abiotic Stress Response in Arabidopsis. Plant Cell 20:1678-1692.
Sakai, T., Honig, H.V.D., Nishioka, M., Uehara, Y., Takahashi, M.,Fujisawa, N., Saji, K., Seki, M., Shinozaki, K., Jones, M.A., Smirnoff, N., Okada, K. and Wasteneys, G.O. (2008) Armadillo repeat-containing kinesins and a NIMA-related kinase are required for epidermal cell morphogenesis in Arabidopsis. Plant J. 53:157-171.
Narusaka, M., Kawai, K., Izawa, N., Seki, M., Shinozaki, K., Seo, S., Kobayashi, M., Shiraishi, T. and Narusaka, Y. (2008) Gene coding for SigA-binding protein from Arabidopsis appears to be transcriptionally up-regulated by salicylic acid and NPR1-dependent mechanisms. Journal of General Plant Pathology 74:345-354.
Sasaki, Y., Takahashi, K., Oono, Y., Seki, M., Yoshida, R. and Shinozaki, K. and Uemura, M. (2008) Characterization of growth phase-specific responses of Arabidopsis thaliana suspension cultured cells to cold. Plant Cell and Environ. 31:354-365.
Cartagena, J.A., Matsunaga, S., Seki, M., Kurihara, D., Yokoyama, M., Shinozaki, K., Fujimoto, S., Azumi, Y., Uchiyama, S. and Fukui, K. (2008) The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. Developmental Biol. 315: 355-368.
総 説
Yamasaki, K., Kigawa, T., Inoue, M., Watanabe, S., Tateno, M., Seki, M., Shinozaki, K. and Yokoyama, S. (2008) Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains. Plant Physiol. Biochem. 46:394-401.
2007
原著論文
Mitsuda, N., Iwase, A., Yamamoto, H., Yoshida, M., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2007) NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 19, 270-80.Abstract
Itoh, T., Tanaka, T., Barrero, R.A., Yamasaki, C., Fujii, Y., Hilton, P.B., Antonio, B.A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A.T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y.I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J.P., Kikuchi, S., , Komatsu, S., Koyanagi, K.O., Kubooka, H., Lieberherr, D., Lin, Y.C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W.R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., de Oliveira, A.C., Oota, S., Osato, N., Palmer, L.E., Quetier, F., Raghuvanshi,S.,Saichi,N.,Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N.K., Smith-White, B., Takeda, J., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A.K., Vanavichit, A., Wang, A., Wing, R.A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T. and Sasaki, T. (2007) Curated Genome Annotation of Oryza sativa ssp. Japonica and Comparative Genome Analysis with Arabidopsis thaliana. Genome Res. 17:175-183.
Abstract
Miwa, K., Takano, J., Omori, H., Seki, M., Shinozaki, K. and Fujiwara, T. (2007) Plants tolerant of high boron levels. Science 318:1417.
Sakurai, T., Plata, G., Rodriguez-Zapata, F., Seki, M., Salcedo, A., Toyoda, A., Ishiwata, A., Tohme, J., Sakaki, Y., Shinozaki, K. and Ishitani, M. (2007) Sequencing analysis of 20.000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol. 7:66.
Nanjo, T., Sakurai, T., Totoki, Y., Toyoda, A., Nishiguchi, M., Kado, T., Igasa, N., Futamura, N., Seki, M., Sakaki, Y., Shinozaki, K. and Shinohara, K. (2007) Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones. BMC Genomics 8: 448.
Fujita, M., Mizukado, S., Fujita, Y., Ichikawa, T., Nakazawa, M., Seki, M., Matsui, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2007) Identification of stress-tolerance-related transcription-factor genes via mini-scale full-length cDNA over-expressor (FOX) gene hunting system. Biochem. Biophys. Res. Commun. 364:250-257.
Nakamura, H., Hakata, M., Amamo, K., Miyao, A., Toki, N., Kajikawa, M., Pang, J., Higashi, N., Ando, S., Toki, S., Fujita, M., Enju, A., Seki, M., Nakazawa, M., Ichikawa, T., Shinozaki, K., Matsui, M., Nagamura, Y., Hirochika, H. and Ichikawa, H. (2007) A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system. Plant Mol. Biol. 65:357-371.
Yamamoto, Y.Y., Ichida, H., Matsui, M., Obokata, J., Sakurai, T., Satou, M., Seki, M., Shinozaki, K. and Abe, T. (2007) Identification of plant promoter constituents by analysis of local distribution of short sequences. BMC Genomics 8:67.
Cho, K.H., Choi, H., Seki, M., Jun, S.E., Yi, Y.B., Shinozaki, K., Tsukaya, H. and Kim, G.T. (2007) DRL1 regulates adaxial leaf patterning and shoot apical meristem activity in Arabidopsis. J. Plant Biol. 50: 467-474.
総 説
Seki, M., Umezawa, T., Urano, K. and Shinozaki, K. (2007) Regulatory metabolic network in drought stress responses. Curr. Opin. Plant Biol. 10:296-302.
Seki, M., Umezawa, T., Kim, J.M., Matsui, A., To, T. and Shinozaki, K. (2007) Transcriptome analysis of plant drought and salt stress response. In "Advances in Molecular Breeding toward Drought and Salt Tolerant Crops (Edited by Drs. M.A. Jenks, P.M. Hasegawa and S.M. Jain)", pp. 261-283. Springer Publishing.
2006
原著論文
Ichikawa , T., Nakazawa, M., Kawashima, M., Iizumi, H., Kuroda, H., Kondou, Y., Tsuhara, Y., Suzuki, K., Ishikawa, A., Seki, M., Fujita, M., Motohashi, R., Nagata, N., Takagi, T., Shinozaki, K. and Matsui, M. (2006) The FOX hunting system: an alternative gain-of-function gene hunting technique. Plant J. 45: 974-985.Abstract
Matsuda, T., Kigawa, T., Koshiba, S., Inoue, M., Aoki, M., Yamasaki, K., Seki, M., Shinozaki, K. and Yokoyama, S. (2006) Cell-free synthesis of zinc-binding proteins. J. Struct. Funct. Genomics 7:93-100.
Abstract
Nakashima, K., Fujita, Y., Katsura, K., Maruyama, K., Narusaka, Y., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2006) Transcriptional Regulation of ABI3- and ABA-responsive Genes Including RD29B and RD29A in Seeds, Germinating Embryos, and Seedlings of Arabidopsis.Plant Mol. Biol. 60:51-68.
Abstract
Gross, J., Cho, W-K.., Lezhneva, L., Falk, J., Krupinska, K., Shinzoaki, K., Seki, M., Herrmann, R.G. and Meurer, J. (2006) A plant locus essential for phylloquinone (Vitamin K1) Biosynthesis orininated from a fusion of foure eubacterial genes, J. Biol. Chem., 281, 17189-17196.
Abstract
Sakuma, Y., Maruyama, K., Osakabe, Y., Feng, Q., Seki, M., Shinozaki K. and Yamaguchi-Shinozaki, K. (2006) Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18:1292-1309.
Abstract
Yamasaki, K., Kigawa, T., Inoue, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2006) Disruption of the Second Zinc-Binding Site of an Arabidopsis SBP-Family Transcription Factor Retains Its Tertiary Structure. FEBS Lett. 580:2109-2116.
Abstract
Umezawa, T., Okamoto, M.,
Abstract
Ito, Y., Katsura, K., Maruyama, K., Taji, T., Kobayashi, M., Seki, M., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2006) Functional Analysis of Rice DREB1/CBF-Type Transcription Factors Involved in Cold-Responsive Gene Expression in Transgenic Rice. Plant Cell Physiol.47:141-153.
Abstract
Abstract
Machida, M., Takechi, K., Sato, H., Chung, S.J., Kuroiwa, H., Takio, S., Seki, M., Shinozaki, K., Fujita, T., Hasebe, M. and Takano, H. (2006) Gene for the peptidoglycan synthesis pathway are essential for chloroplast division in moss, Proc. Natl. Acad. Sci. USA., 103, 6753-6758
Abstract
Hasegawa, Y., Seki, M., Mochizuki, Y., Heida, N., Okamoto, K., Sakurai, T., Satou, M., Akiyama, K., Iida, K., Lee, K., Kanaya, S., Demura, T., Shinozaki, K., Konagaya, A. and Toyoda, T. (2006) A flexible representation of omic knowledge for thorough analysis of microarray data, Plant Methods 2, 5.
Abstract
Oono, Y., Seki, M., Satou, M., Iida, K., Akiyama, K., Sakurai, T., Fujita, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006). Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays, Funct. Integr. Genomics, 6, 212-234.
Abstract
<総説>
Seki, M., Kamiya, A., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2006) Generation of full-length cDNA libraries from plant materials. In "Methods in Molecular Biology-ESTs (Edited by Dr. John Parkinson)". Humana Press Inc., NJ. (in press).