植物ゲノム発現研究チーム

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2005

原著論文

Fujita, Y., Fujita, M., Satoh, R., Maruyama, K., Parvez, M.M., Seki, M., Hiratsu, K., Ohme-Takagi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) AREB1 is a transcription activator of novel ABRE-dependent ABA-signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell 17:3470-3488.
Abstract

Nishimura, N., Kitahata, N., Seki, M., Narusaka, Y., Narusaka, M., Kuromori, T., Asami, T., Shinozaki, K. and Hirayama, T. (2005) Analysis of ABA hypersensitive germination 2 (ahg2) revealed the pivotal functions of PARN in stress response in Arabidopsis. Plant J. 44:972-984.?
Abstract

Mitsuda, N., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2005) The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. Plant Cell 17:2993-3006.
Abstract

Narusaka, Y., Narusaka, M., Seki, M., Ishida, J., Shinozaki, K., Nan , Y., Park, P., Shiraishi, T. and Kobayashi, M. (2005) Cytological and molecular analyses of non-host resistance of Arabidopsis thaliana to Alternaria alternata. Molecular Plant Pathology., 6 , 615-627. <<Abstract

Bhushan, S., Stahl, A., Nilsson, S., Lefebve, B., Seki, M., Roth, C., McWilliam, D., Wright, A.J., Liberles, D.A., Shinozaki, K., Bruce, B.D., Boutry, M. and Glaser, E. (2005). Catalysis, subcellular localization, expression and evolution of the targeting peptides degrading protease, AtPreP2, Plant Cell Physiol., 46, 985-996.
Abstract

Ito, T., Motohashi, R., Kuromori, T., Noutoshi, Y., Seki, M., Kamiya, A., Mizukado, S., Sakurai, T. and Shinozaki, K. (2005) A resource of 5,814 dissociation transposon-tagged and sequence-indexed lines of Arabidopsis transposed from start loci on chromosome 5. Plant Cell Physiol. 46:1149-1153.
Abstract

Osakabe, Y., Maruyama, K., Seki, M., Satou, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) An LRR receptor kinase, RPK1, is a key membrane-bound regulator of abscisic acid early signaling in Arabidopsis. Plant Cell 17:1105-1119.
Abstract

Hiraguri, A., Itoh, R., Kondo, N., Nomura, Y., Aizawa, D., Murai, Y., Koiwa, H., Seki, M., Shinozaki, K. and Fukuhara, T. (2005). Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana, Plant Mol. Biol., 57, 173-188.
Abstract

Savitch, L V., Allard, G., Seki, M., Robert, L S., Thinker, N.A., Huner, N.P.A., Shinozaki, K. and Singh, J. (2005). The effect of overexpression of two Barassica CBF/DREB-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus, Plant Cell Physiol., 46, 1525-1539.
Abstract

Noutoshi, Y., Ito, T., Seki, M., Nakashita, H., Yoshida, S., Marco, Y., Shirasu, K. and Shinozaki, K. (2005) A single amino acid insertion in the WRKY domain of the Arabidopsis TIR-NBS-LRR-WRKY type disease resistance protein SLH1 (SENSITIVE TO LOW HUMIDITY 1) causes activation of defense responses and hypersensitive cell death. Plant J. 43:873-888.
Abstract

Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. (2005). RARTF: database and tools for complete sets of Arabidopsis transcription factors, DNA Res., 12, 247-256.
Abstract

Sakurai, T., Satou, M., Akiyama, K., Iida, K., Seki, M., Kuromori, T., Ito, T., Konagaya, A., Toyoda, T. and Shinozaki, K. (2005). RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome.. Nuc. Acid. Res., 33, D647-D650.
Abstract

Yamasaki, K., Kigawa, T., Inoue, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2005) Solution Structure of the Major DNA-Binding Domain of Arabidopsis ETHYLENE-INSENSITIVE3-LIKE3. J. Mol. Biol. 348:253-264.
Abstract

Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Hayami, N., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2005). Solution structure of an Arabidopsis WRKY DNA binding domain, Plant Cell, 17, 944-956.
Abstract

Matsui, A., Yokoyama, T., Seki, M., Ito, T., Shinozaki, K., Takahashi, T., Komeda, Y. and Nishitani, K. (2005). AtXTH27 plays an essential role in cell wall modification during the development of tracheary elements, Plant J., 42, 525-534.
Abstract

Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. Yokoyama, S. and Guntert, P. (2005). Solution structure of the rhodanese homology domain At4g01050 (175-295) from Arabidopsis thaliana, Protein Sci., 14, 224-230.
Abstract

Kamei, A., Seki, M., Umezawa, T., Ishida, J., Satou, M., Akiyama, K., Zhu, J-K. and Shinozaki, K. (2005). Analysis of gene expression profiles in Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1, Plant Cell Environ., 28, 1267-1275.
Abstract

Yoshitani, N., Satou, K., Saito, K., Suzuki, S., Hatanaka, H., Seki, M., Shinozaki, K., Hirota, H. and Yokoyama, S. (2005) A structure-based strategy for discovery of small ligands binding to functionally unknown proteins: Combination of in silico screening and surface plasmon resonance measurements.? Proteomics 5:1472-1480.
Abstract


総　説

Seki, M., Ishida, J., Nakajima, M., Enju, A., Iida, K., Satou, M., Fujita, M., Narusaka, Y., Narusaka, M., Sakurai, T., Akiyama, K., Oono, Y., Kamei, A., Umezawa, T., Mizukado, S., Maruyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2005). Genomic analysis of stress response. In Plant Abiotic Stress. M.A. Jenks and P.M. Hasegawa, eds, Blackwell Publishing Ltd, Sheffield, UK , 248-265.

Seki, M., Ishida, J., Nakajima, M., Enju, A., Kamei, A., Oono, Y., Narusaka, M., Satou, M., Sakurai, T. and Shinozaki, K. (2005) Gene expression profiling in plants with cDNA microarrays. In "DNA microarrays -Advanced Methods (Edited by Dr. Ulrike Nuber)", pp. 25-38. Garland Science/BIOS Scientific Publishers, UK.

大野陽子、関　原明、篠崎和子、篠崎一雄. 植物の根に関する諸問題(143)
―環境ストレスおよびその回復過程に働く遺伝子発現応答研究の現状 (2) 低温馴化と脱馴化（低温ストレス）―. 「農業および園芸」. 株式会社　養賢堂. 80(7):798-806 (2005).

大野陽子、関　原明、篠崎和子、篠崎一雄. 植物の根に関する諸問題(143)
―環境ストレスおよびその回復過程に働く遺伝子発現応答研究の現状 (1) 乾燥ストレス―. 「農業および園芸」. 株式会社　養賢堂.80(6): 692-701 (2005).

関　原明、石田順子、篠崎一雄. マイクロアレイ法. 細胞工学別冊「植物細胞工学シリ-ズ」21、「改訂3版　モデル植物の実験プロトコール」（島本　功、岡田清孝、田畑哲之　編）. 株式会社　秀潤社. 255-262 (2005).

2004

原著論文

Ogihara, Y., Mochida, K., Kawaura, K., Murai, K., Seki, M., Kamiya, A., Shinozaki, K., Carninci, P., Hayashizaki, Y., Shin-I, T., Kohara, Y. and Yamazaki, Y. (2004) Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. Genes Genet Syst 79:227-232.

Hunt, L., Otterhag, L., Lee, J.C., Lasheen, T., Hunt, J., Seki, M., Shinozaki, K., Sommarin, M., Gilmour, D.J., Pical, C. and Gray, J.E. (2004) Gene-specific expression and calcium activation of Arabidopsis thaliana phospholipase C isoforms. New Phytologist 162:643-654.

Basset, G.J., Ravanel, S., Quinlivan, E.P., White, R., Giovannoni, J.J., Rebeille, F., Nichols, B.P., Shinozaki, K., Seki, M., Gregory, J.F.III. and Hanson, A.D. (2004) Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. Plant J. 40:453-461

Taji, T., Seki, M., Satou, M., Sakurai, T., Kobayashi, M., Ishiyama, K., Narusaka, Y., Narusaka, M., Zhu, J.K. and Shinozaki, K. (2004) Comparative Genomics in Salt Tolerance between Arabidopsis and Arabidopsis-Related Halophyte Salt Cress Using Arabidopsis Microarray. Plant Physiol. 135:1697-1709

Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. (2004) Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res. 32:5096-5103.

Sato-Nara, K., Nagasaka, A., Yamashita, H., Ishida, J., Enju, A., Seki, M., Shinozaki, K. and Suzuki, H. (2004) Identification of genes regulated by dark adaptation and far-red light illumination in roots of Arabidopsis thaliana. Plant Cell Environment 27:1387-1394.

Niwa, Y., Kato, T., Tabata, S., Seki, M., Kobayashi, M., Shinozaki, K. and Moriyasu, Y. (2004) Disposal of chloroplasts with abnormal function into the vacuole in Arabidopsis thaliana cotyledon cells. Protoplasma 223:229-232

Higuchi, M., Pischke, M.S., Mahonen, A.P., Miyawaki, K., Hashimoto, Y., Seki, M., Kobayashi, M., Shinozaki, K., Kato, T., Tabata, S., Helariutta, Y., Sussman, M.R. and Kakimoto, T. (2004) In planta functions of the Arabidopsis cytokinin receptor family. Proc. Natl. Acad. Sci. USA 101:8821-8826.

Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., Tran, L.S.P., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) A dehydration-induced NAC protein, RD26 is involved in ABA-dependent stress signaling pathway. Plant J. 39:863-876.

Tran, L.S.P., Nakashima, K., Sakuma, Y., Simpson, S.D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Functional analysis of Arabidopsis NAC transcription factors controlling expression of erd1 gene under drought stress. Plant Cell 16:2481-2498.

Maruyama, K., Sakuma, Y., Kasuga, M., Ito, Y., Seki, M., Goda, H., Shimada, Y., Yoshida, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J. 38:982-993.

Sawasaki, T., Hasegawa, Y., Morishita, R., Seki, M., Shinozaki, K. and Endo, Y. (2004) Genome-scale, biochemical annotation method based on the wheat germ cell-free protein synthesis system. Phytochemistry 65:1549-1555.

Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. and Guntert, P. (2004) NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana. J. Biomol. NMR 29:207-208.

Lopez-Mendez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. and Guntert, P. (2004) NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana. J. Biomol. NMR 29:205-206.

Narusaka, Y., Narusaka, M., Park, P., Kubo, Y., Hirayama, T., Seki, M., Shiraishi, T., Ishida, J., Nakashima, M., Enju, A., Sakurai, T., Satou, M., Kobayashi, M. and Shinozaki, K. (2004) RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum. Mol. Plant Microbe. Interact. 17:749-762.

Zhao, L., Nakazawa, M., Takase, T., Manabe, K., Kobayashi, M., Seki, M., Shinozaki, K. and Matsui, M. (2004) Overexpression of LSH1, a member of an uncharacterized gene family, causes enhanced light regulation of seedling development. Plant J. 37:694-706.

Chini, A., Grant, J., Seki, M., Shinozaki, K. and Loake, G. (2004) Drought tolerance established by enhanced expression of the CC-NBS-LRR gene, ADR1, requires salicylic acid, EDS1 and ABI1. Plant J. 38:810-822.

Nagashima, A., Hanaoka, M., Fujiwara, M., Motohashi, R., Seki, M., Shinozaki, K., Kanamaru, K., Takahashi, H. and Tanaka, K. (2004) DNA microarray analysis of plastid gene expression in an Arabidopsis mutant deficient in a plastid transcription factor sigma, SIG2. Biosci. Biotechnol. Biochem. 68:694-704.

Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Nunokawa, E.,Ishizuka, Y., Terada, T., Shirouzu, M., Osanai, T., Tanaka, A., Seki, M.,Shinozaki, K. and Yokoyama, S. (2004) A Novel Zinc-binding Motif Revealed by Solution Structures of DNA-binding Domains of Arabidopsis SBP-family Transcription Factors. J. Mol. Biol. 337: 49-63.

Suzuki, T., Inagaki, S., Nakajima, S., Akashi, T., Ohto, M., Kobayashi, M., Seki, M., Shinozaki, K., Kato, T., Tabata, S., Nakamura, K. and Morikami, A. (2004) A novel Arabidopsis gene TONSOKU is required for proper cell arrangement in root and shoot apical meristems. Plant J. 38:673-684.

Takahashi, N., Kuroda, H., Kuromori, T., Hirayama, T., Seki, M., Shinozaki, K., Shimada, H. and Matsui, M. (2004) Expression and interaction analysis of Arabidopsis Skp1-related genes. Plant Cell Physiol. 45: 83-91.

Bassel, G.J.C., Quinlivan, E.P., Ravanel, S., Rebeille, F., Nichols, B.P., Shinozaki, K., Seki, M., Adams-Phillips, L.C., Giovannoni, J.J., Gregory, III.J.F. and Hanson, A.D .(2004) Folate synthesis in plants: The p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proc. Natl. Acad. Sci. USA 101:1496-1501.

Narusaka, Y., Narusaka, M., Seki, M., Umezawa, T., Ishida, J., Nakashima, M., Enju, A. and Shinozaki, K. (2004) Crosstalk in the Responses to Abiotic and Biotic Stresses in Arabidopsis: Analysis of Gene Expression in Cytochrome P450 Gene Superfamily by cDNA Microarray. Plant Mol. Biol. 55:327-342.

Yasuhara, M., Mitsui, S., Hirano, H., Takanabe, R., Tokioka, Y., Ihara, N., Komatsu, A., Seki, M., Shinozaki, K. and Kiyosue, T. (2004)Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis. J. Exp. Bot. 55: 2015?2027

Takahashi, S., Seki, M., Ishida, J., Satou, M., Sakurai, T., Narusaka, M., Kamiya, A., Nakajima, M., Enju, A., Akiyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray. Plant Mol. Biol. 56:29-55.

Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hayami, N., Terada, T., Shirouzu, M., Osanai, T., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2004) Solution structure of the B3 DNA domain of the Arabidopsis cold-responsive transcription factor RAV1. Plant Cell 16: 3448-3459.


総　説

Seki, M., Satou, M., Sakurai, T., Akiyama, K., Iida, K., Ishida, J., Nakajima, M., Enju, A., Narusaka, M., Fujita, M., Oono, Y., Kamei, A., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) Expression profiling under abiotic stress conditions using RIKEN Arabidopsis full-length (RAFL) cDNA microarray. J. Exp. Bot. 55:213-223.


Seki, M., Satou, M., Sakurai, T., Akiyama, K., Iida, K., Ishida, J., Nakajima, M., Enju, A., Narusaka, M., Fujita, M., Oono, Y., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2004) Full-length cDNAs for the discovery and annotation of genes in A. thaliana. In "Plant Functional Genomics (edited by Dario Leister)". pp. 3-22.Haworth's Food Products Press, Binghamton, New York.

関　原明、佐藤将一、石田順子、櫻井哲也、中嶋舞子、秋山顕治、槐　亜希子、飯田　慶、篠崎一雄. シロイヌナズナ完全長cDNAエンサイクロペディアの作製と遺伝子の機能・発現解析への利用. ゲノミクス・プロテオミクスの新展開（今中忠行　監修）. 株式会社　エヌ・ティー・エス. 328-336 (2004).

鳴坂義弘、鳴坂真理、関原明、佐藤将一、櫻井哲也、小林正智、篠崎一雄.
植物-病原微生物相互作用におけるトランスクリプトーム解析. 植物感染生理談話会論文集、「自他識別と応答のバイオフロンティア」40: 83-90 (2004)

2003

原著論文

Yamada, K., Lim, J., Dale, J.M., Chen, H., Shinn, P., Palm, C.J., Southwick, A.M., Wu, H.C., Kim, C., Nguyen, M., Pham, P., Cheuk, R., Karlin-Neumann, G., Liu, S.X., Lam, B., Sakano, H., Wu, T., Yu, G., Miranda, M., Quach, H.L., Tripp, M., Chang, C.H., Lee, J.M., Toriumi, M., Chan, M.M.H., Tang, C.C., Onodera, C.S., Deng, J.M., Akiyama, K., Ansari, Y., Arakawa, T., Banh, J., Banno, F., Bowser, L., Brooks, S., Carninci, P., Chao, Q., Choy, N., Enju, A., Goldsmith, A.D., Gurjal, M., Hansen, N.F., Hayashizaki, Y., Johnson-Hopson, C., Hsuan, V.W., Iida, K., Karnes, M., Khan, S., Koesema, E., Ishida, J., Jiang, P.X., Jones, T., Kawai, J., Kamiya, A., Meyers, C., Nakajima, M., Narusaka, M., Seki, M., Sakurai, T., Satou, M., Tamse, R., Vaysberg, M., Wallender, E.K., Wong, C., Yamamura, Y., Yuan, S., Shinozaki, K., Davis, R.W., Theologis, A. and Ecker, J.R. (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302: 842-846.

Oono, Y., Seki, M., Nanjo, T., Narusaka, M., Fujita, M., Satoh, R., Satou, M., Sakurai, T., Ishida, J., Akiyama, K., Iida, K., Maruyama, K., Sato, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca. 7000 full-length cDNA microarray. Plant J. 34: 868-887.

Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) Function as Transcriptional Activators in Abscisic Acid Signaling. Plant Cell 15:63-78.

Dubouzet, J.G., Sakuma, Y., Ito, Y., Kasuga, M., Dubouzet, E.G., Miura, S., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) OsDREB genes in rice, Oryza sativa L, encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 33:751-763.

Simpson, S.D., Nakashima, K., Narusaka, Y., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. Plant J. 33:259-270.

Narusaka, Y., Narusaka, M., Seki, M., Ishida, J., Nakashima, M., Kamiya, A., Enju, A., Sakurai, T., Satou, M., Kobayashi, M., Tosa, Y., Park, P. and Shinozaki, K. (2003) The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack. Plant Cell Physiol. 44:377-387.

Kimura, M., Yamamoto, Y.Y., Seki, M., Sakurai, T., Satou, M., Abe, T., Yoshida, S., Manabe, K., Shinozaki, K. and Matsui, M. (2003) Identification of Arabidopsis genes regulated by high light stress using cDNA microarray. Photochem. Photobiol. 77: 226-233.

Narusaka, Y., Narusaka, M., Seki, M., Fujita, M., Ishida, J., Nakashima, M., Enju, A., Sakurai, T., Satou, M., Kamiya, A., Park, P., Tosa, Y., Kobayashi, M., Shinozaki, K. (2003) Expression profiles of Arabidopsis phospholipase A IIA gene in response to biotic and abiotic stresses. Plant Cell Physiol. 44: 1246-1252.

Nanjo, T., Fujita, M., Seki, M., Kato, T., Tabata, S. and Shinozaki, K. (2003) Toxicity of free proline revealed in an Arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase. Plant Cell Physiol. 44: 541-548.

Rabbani, M.A., Maruyama, K., Abe, H., Khan, M.A., Katsura, K., Ito, Y., Yoshiwara, K., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Monitoring expression profiles of rice (Oryza sativa L.) genes under cold, drought and high-salinity stresses, and ABA application using both cDNA microarray and RNA gel blot analyses. Plant Physiol. 133:1755-1767.

Urano, K., Yoshiba, Y., Nanjo, T., Igarashi, Y., Seki, M., Sekiguchi, F., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Characterization of Arabidopsis genes involved in biosynthesis of polyamines in abiotic stress responses and developmental stages. Plant Cell Environ. 26:1917-1926.

Shimada, T., Yamada, K., Kataoka, M., Nakaune, S., Koumoto, Y., Kuroyanagi, M., Tabata, S., Kato, T., Shinozaki, K., Seki, M., Kobayasi, M., Kondo, M., Nishimura, M. and Hara-Nishimura, I. (2003) Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana. J. Biol. Chem. 278:32292-32299.

Nishiyama, T., Fujita, T., Shin, T., Seki, M., Nishide, H., Uchiyama, I., Kamiya, A., Carninci, P., Hayashizaki, Y., Shinozaki, K., Kohara, Y. and Hasebe, M. (2003) Comparative genomics of the Physcomitrella gametophytic transcriptome and Arabidopsis genome: implication for the land plant evolution. Proc. Natl. Acad. Sci. USA 100: 8007-8012.

Igarashi, D., Miwa, T., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Ohsumi, C. (2003) Identification of photorespiratory glutamate: glyoxylate aminotransferase (GGAT) gene in Arabidopsis. Plant J. 33: 975-987.

総　説

Seki, M., Kamei, A., Satou, M., Sakurai, T., Fujita, M., Oono, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Transcriptome　Analysis in Abiotic Stress Conditions in Higher Plants. Topics Curr. Genet. 4: 271-295.

Seki, M., Kamei, A., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr. Opin. Biotechnol. 4:194-199.

Shinozaki, K., Yamaguchi-Shinozaki, K. and Seki, M. (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr. Opin. Plant Biol. 6: 410-417.

関　原明、佐藤将一、石田順子、櫻井哲也、中嶋舞子、秋山顕治、槐　亜希子、飯田　慶、大野陽子、篠崎一雄. シロイヌナズナ完全長cDNAを用いた植物ゲノムの機能・発現解析.蛋白質　核酸　酵素 48(14): 1890-1898 (2003).

2002

原著論文

Seki, M., Narusaka, M., Kamiya, A., Ishida, J., Satou, M., Sakurai, T., Nakajima, M., Enju, A., Akiyama, K., Oono, Y., Muramatsu, M., Hayashizaki, Y., Kawai, J., Carninci, P., Itoh, M., Ishii, Y., Arakawa, T., Shibata, K., Shinagawa, A. and Shinozaki, K. (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science 296: 141-145.

Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji, T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold, and high-salinity stresses using a full-length cDNA microarray. Plant J. 31: 279-292.

Seki, M., Ishida, J., Narusaka, M., Fujita, M., Nanjo, T., Umezawa, T., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2002) Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct. Integr. Genomics 2:282-291.

Satoh, R., Nakashima, K., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) ACTCAT, a novel cis-acting element for proline- and hypoosmolarity-responsive expression of the ProDH gene encoding proline dehydrogenase in Arabidopsis. Plant Physiol. 130:709-719.

Osakabe, Y., Miyata, S., Urao, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) Overexpression of Arabidopsis response regulators, ARR4/ATRR1/IBC7 and ARR8/ATRR3, alters cytokinin responses differentially in the shoot and in callus formation. Biochem. Biophys. Res. Commun. 293: 806-815.

Kuroda, H., Takahashi, N., Shimada, H., Seki, M., Shinozaki, K. and Matsui, M. (2002) Classification and expression analysis of Arabidopsis F-box-containing protein genes. Plant Cell Physiol. 43:1073-1085.

Taji, T., Ohsumi, C., Iuchi, S., Seki, M., Kasuga, M., Kobayashi, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2002) Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J. 29: 417-426.

Ito, T., Motohashi, R., Kuromori, T., Mizukado, S., Sakurai, T., Kanahara, H., Seki, M. and Shinozaki, K. (2002) A New Resource of Locally Transposed Dissociation Elements for Screening Gene-Knockout Lines in Silico on the Arabidopsis Genome. Plant Physiol. 129: 1695-1699.


総　説

Seki, M., Satou, M., Sakurai, T. and Shinozaki, K. (2002) RIKEN Arabidopsis full-length (RAFL) cDNA database. Trends Plant Sci. 7:562-563.

Yamaguchi-Shinozaki, K., Kasuga, M., Liu, Q., Nakashima, K., Sakuma, Y., Abe, H., Shinwari, Z.K., Seki, M. and Shinozaki, K. (2002) Development of Drought-Resistant and Water Stress-Tolerant Crops through Biotechnology. In JIRCAS International Symposium Series No.10: The 8th JIRCAS International Symposium: Water for Sustainable Agriculture in Developing Regions. pp. 23-34.

Yamaguchi-Shinozaki, K., Kasuga, M., Liu, Q., Nakashima, K., Sakuma, Y., Abe, H., Shinwari, Z.K., Seki, M. and Shinozaki, K. (2002) Biological mechanisms of drought stress response. JIRCAS Working Report 23: 1-8.

櫻井哲也、佐藤将一、秋山顕治、関　原明、篠崎一雄.ゲノム解析の進展.バイオインフォマティクス. 蛋白質核酸酵素増刊号「植物の形づくり」 (中村研三、町田泰則、島本功、福田裕穂、岡田清孝　編) 共立出版株式会社 47(12):1500-1505 (2002).

澤崎達也、関　原明、篠崎一雄、遠藤弥重太. 植物cDNAからの無細胞蛋白質合成：コムギ胚芽系を用いたシロイヌナズナ蛋白質の網羅的発現. 蛋白質 核酸 酵素 臨時増刊号 "構造プロテオミクス?蛋白質ネットワークの構造生物学 (大島泰郎、西村善文、横山茂之、中村春木　編)" 47 (8): 1003-1008(2002).

2001

原著論文

Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses using a full-length cDNA microarray. Plant Cell 13: 61-72.

Yoshiba, Y., Aoki, C., Iuchi, S., Nanjo, T., Seki, M., Sekiguchi, F., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2001) Characterization of four extensin genes in Arabidopsis thaliana by differential gene expression under stress and non-stress conditions. DNA Res. 8: 115-122.

Inoue, T., Higuchi, M., Hashimoto, Y., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Kakimoto, T. (2001) Identification of CRE1 as a cytokinin receptor from Arabidopsis. Nature 409: 1060-1063.

Iuchi, S., Kobayashi, M., Taji, T., Naramoto, M., Seki, M., Kato, T., Tabata, S., Kakubari, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2001) Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis, in Arabidopsis. Plant J. 27: 325-333.


総　説

Seki, M., Narusaka, M., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2001) Arabidopsis encyclopedia using full-length cDNAs and its application. Plant Physiol. Biochem. 39: 211-220.

篠崎一雄、関　原明. シロイヌナズナゲノム上に同定された転写因子の遺伝子.　植物ゲノム機能のダイナミズム (岩淵雅樹、篠崎一雄　編). シュプリンガー、フェアラーク東京株式会社 19-24 (2001).

関　原明. 第１７回国際植物生長物質会議参加報告. 植物の生長調節.　36 (2): 228 (2001) .